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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
UVM cis rs9902453 1 rs9890886 chr17:28391076 EFCAB5 chr17:28256874-28435469:+ -0.4 -5.08 4.7E-6 Coffee consumption (cups per day)
UVM cis rs9902453 1 rs9891871 chr17:28370191 EFCAB5 chr17:28256874-28435469:+ -0.4 -5.08 4.7E-6 Coffee consumption (cups per day)
UVM cis rs9902453 1 rs9896062 chr17:28357047 EFCAB5 chr17:28256874-28435469:+ -0.4 -5.08 4.7E-6 Coffee consumption (cups per day)
UVM cis rs9902453 1 rs9897206 chr17:28406108 EFCAB5 chr17:28256874-28435469:+ -0.4 -5.08 4.7E-6 Coffee consumption (cups per day)
UVM cis rs9902453 1 rs9902453 chr17:28349095 EFCAB5 chr17:28256874-28435469:+ -0.4 -5.22 2.86E-6 Coffee consumption (cups per day)
UVM cis rs9902453 1 rs9906340 chr17:28398977 EFCAB5 chr17:28256874-28435469:+ -0.4 -5.08 4.7E-6 Coffee consumption (cups per day)
UVM cis rs9908102 1 rs9908102 chr17:12896553 ELAC2 chr17:12895703-12921359:- 0.44 4.8 1.28E-5 Schizophrenia
UVM cis rs1046896 1 rs9909940 chr17:80689036 FN3KRP chr17:80674582-80685889:+ -0.55 -5.19 3.12E-6 Glycated hemoglobin levels
UVM cis rs9902453 1 rs9912741 chr17:28359511 EFCAB5 chr17:28256874-28435469:+ -0.4 -5.08 4.7E-6 Coffee consumption (cups per day)
UVM cis rs10935120 1 rs9968172 chr3:134231251 ANAPC13 chr3:134196547-134204865:- -0.46 -7.06 3.0E-9 Height
UVM cis rs10935120 1 rs9985356 chr3:134232920 ANAPC13 chr3:134196547-134204865:- -0.49 -5.74 4.17E-7 Height
UVM cis rs10935120 1 rs9989967 chr3:134238964 ANAPC13 chr3:134196547-134204865:- 0.46 6.87 6.1E-9 Height
UVM cis rs10935120 1 rs9990351 chr3:134239191 ANAPC13 chr3:134196547-134204865:- -0.46 -5.78 3.64E-7 Height
UVM cis rs2273 1 rs9995007 chr4:76897791 NAAA chr4:76831809-76862166:- -0.46 -5.35 1.77E-6 Longevity